[Xenopus] Xenopus genome blast

[Atsushi Suzuki]

Hi Peter,

I have just tested Xenbase BLAST against both X. laevis v7 and X. tropicalis
v8.
Both of them worked properly using Google Chrome.

You might want to try Japanese site at National Institute of Genetics. 
http://xenopus.lab.nig.ac.jp/

Best,

Atsushi

-------------------------------------------------------------------
Atsushi Suzuki, Ph.D.
Associate Professor
Institute for Amphibian Biology
Hiroshima University Graduate School of Science Kagamiyama 1-3-1,
Higashihiroshima 739-8526 JAPAN
TEL: 81-824-24-7103
e-mail: asuzuki at hiroshima-u.ac.jp
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________________________________________
From: Peter Walentek [mailto:walentek at berkeley.edu] 
Sent: Thursday, October 30, 2014 1:07 PM
To: Atsushi Suzuki
Subject: Re: [Xenopus] Xenopus genome blast

Dear Atsushi, 

I meant the one on Xenbase, for blasting against laevis genome assembly. 

Thanks a lot for your response.

Peter


Am 29.10.2014, 20:56 Uhr, schrieb Atsushi Suzuki
<asuzuki at hiroshima-u.ac.jp>:


Dear Peter,
 
It seems to be working at least, in my hand (not a Trick).
 
Is this the page that you are using?
 
Xenopus (Silurana) tropicalis (western clawed frog) Nucleotide BLAST
http://www.ncbi.nlm.nih.gov/blast/Blast.cgi?PAGE_TYPE=BlastSearch&BLAST_SPEC
=OGP__8364__10706
 
Best wishes,
 
Atsushi 
 
-------------------------------------------------------------------
Atsushi Suzuki, Ph.D.
Associate Professor
Institute for Amphibian Biology
Hiroshima University Graduate School of Science Kagamiyama 1-3-1,
Higashihiroshima 739-8526 JAPAN
TEL: 81-824-24-7103
e-mail: asuzuki at hiroshima-u.ac.jp
-----------------------------------------------------------------
 

 
 
 
> -----Original Message-----
> From: xenopus-bounces at lists.mbl.edu [mailto:xenopus-bounces at lists.mbl.edu]
> On Behalf Of Peter Walentek
> Sent: Thursday, October 30, 2014 11:10 AM
> To: xenopus at lists.mbl.edu
> Subject: [Xenopus] Xenopus genome blast
> 
> Hi everyone,
> 
> the Xenopus genome blast function does not work for me for a while now.
> Every now and then I can blast something, but most of the time the search
> doesn't start or gives me an immediate error. Tried different
> browsers/computers and other people had the same problem.
> 
> Does anyone know what is going on and when blast will be fully functional
> again?
> 
> Thanks a lot!
> Peter
> 
> --
> Dr. Peter Walentek
> Harland Lab
> Dept. Molecular & Cell Biology
> University of California at Berkeley
> 
> walentek at berkeley.edu
> _______________________________________________
> Xenopus mailing list
> Xenopus at lists.mbl.edu
> https://lists.mbl.edu/mailman/listinfo/xenopus


-- 
Dr. Peter Walentek
Harland Lab
Dept. Molecular & Cell Biology
University of California at Berkeley

walentek at berkeley.edu