[Xenopus] Xenopus genome blast

[Ira Blitz]

I used Xenbase blast to search both tropicalis and laevis v8 and 7 respectively one minute ago and they work for me (using Firefox).

> On Oct 29, 2014, at 9:42 PM, Atsushi Suzuki <asuzuki at hiroshima-u.ac.jp> wrote:
> 
> Hi Peter,
> 
> I have just tested Xenbase BLAST against both X. laevis v7 and X. tropicalis
> v8.
> Both of them worked properly using Google Chrome.
> 
> You might want to try Japanese site at National Institute of Genetics. 
> http://xenopus.lab.nig.ac.jp/
> 
> Best,
> 
> Atsushi
> 
> -------------------------------------------------------------------
> Atsushi Suzuki, Ph.D.
> Associate Professor
> Institute for Amphibian Biology
> Hiroshima University Graduate School of Science Kagamiyama 1-3-1,
> Higashihiroshima 739-8526 JAPAN
> TEL: 81-824-24-7103
> e-mail: asuzuki at hiroshima-u.ac.jp
> -----------------------------------------------------------------
> ________________________________________
> From: Peter Walentek [mailto:walentek at berkeley.edu] 
> Sent: Thursday, October 30, 2014 1:07 PM
> To: Atsushi Suzuki
> Subject: Re: [Xenopus] Xenopus genome blast
> 
> Dear Atsushi, 
> 
> I meant the one on Xenbase, for blasting against laevis genome assembly. 
> 
> Thanks a lot for your response.
> 
> Peter
> 
> 
> Am 29.10.2014, 20:56 Uhr, schrieb Atsushi Suzuki
> <asuzuki at hiroshima-u.ac.jp>:
> 
> 
> Dear Peter,
>  
> It seems to be working at least, in my hand (not a Trick).
>  
> Is this the page that you are using?
>  
> Xenopus (Silurana) tropicalis (western clawed frog) Nucleotide BLAST
> http://www.ncbi.nlm.nih.gov/blast/Blast.cgi?PAGE_TYPE=BlastSearch&BLAST_SPEC
> =OGP__8364__10706
>  
> Best wishes,
>  
> Atsushi 
>  
> -------------------------------------------------------------------
> Atsushi Suzuki, Ph.D.
> Associate Professor
> Institute for Amphibian Biology
> Hiroshima University Graduate School of Science Kagamiyama 1-3-1,
> Higashihiroshima 739-8526 JAPAN
> TEL: 81-824-24-7103
> e-mail: asuzuki at hiroshima-u.ac.jp
> -----------------------------------------------------------------
>  
> 
>  
>  
>  
>> -----Original Message-----
>> From: xenopus-bounces at lists.mbl.edu [mailto:xenopus-bounces at lists.mbl.edu]
>> On Behalf Of Peter Walentek
>> Sent: Thursday, October 30, 2014 11:10 AM
>> To: xenopus at lists.mbl.edu
>> Subject: [Xenopus] Xenopus genome blast
>> 
>> Hi everyone,
>> 
>> the Xenopus genome blast function does not work for me for a while now.
>> Every now and then I can blast something, but most of the time the search
>> doesn't start or gives me an immediate error. Tried different
>> browsers/computers and other people had the same problem.
>> 
>> Does anyone know what is going on and when blast will be fully functional
>> again?
>> 
>> Thanks a lot!
>> Peter
>> 
>> --
>> Dr. Peter Walentek
>> Harland Lab
>> Dept. Molecular & Cell Biology
>> University of California at Berkeley
>> 
>> walentek at berkeley.edu
>> _______________________________________________
>> Xenopus mailing list
>> Xenopus at lists.mbl.edu
>> https://lists.mbl.edu/mailman/listinfo/xenopus
> 
> 
> -- 
> Dr. Peter Walentek
> Harland Lab
> Dept. Molecular & Cell Biology
> University of California at Berkeley
> 
> walentek at berkeley.edu
> 
> 
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